Accessing ProteinPilot™ Software Searching in the OneOmics™ Suite



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For research use only. Not for use in diagnostic procedures.


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The SCIEX CloudConnect micro-app can be used to transfer files between Illumina BaseSpace and a computer running the PeakView® software. The CloudConnect micro-app is used to upload SWATH® acquisition data files (TOF-MS SWATH .wiff files) along with an ion library consisting of transitions of select proteins and peptides as well as optional retention time calibration peptides to facilitate use of the SWATH Proteomics Cloud Tool Kit for the processing of SWATH acquisition data. This CloudConnect license is cost-free. A license is needed to launch the OneOmics™ suite and gain access to the various workflows such as protein identification with ProteinPilot™ software under the Identify workflows (see image below).
oneomics workflow.PNG

To log into the SCIEX Cloud workspace:

1) Activate and install the CloudConnect license within PeakView software 2.2. Then navigate to the CloudConnect menu and select Open Cloud SciexOS. The SCIEX Cloud workspace sign in dialog will appear in your browser (https://oneomics.sciexcloud.com/). New users will need to register by defining their user ID and password. 
2) After registering and signing in, the OneOmics Suite landing page will appear. The Organize, Identify, Quantify and Interpret tiles will be visible.
3) In the upper right-hand corner, select the cog icon, and then under your username select Connect Services. On the next page, activate both the SCIEX Cloud Storage and the Illumina BaseSpace services and select Done.
4) After both services are active, the features in the ProteinPilot module will be accessible from the SCIEX Cloud workspace.
OO-connect services.PNG