MultiQuant Software

Powerful and Efficient Mass Spec Quantitation Software

What used to take hours, now takes minutes. That’s MultiQuant™ Software—process and quantify large batches of data to get clear, reliable results in the least amount of time; regardless of your field and level of mass spec expertise! Supports all SCIEX Triple Quad™TripleTOF® and QTRAP® systems.

The MultiQuant Software Difference


Create a new quantitation method with ease and be in control over your integration parameters for your quantitation analysis.


Spend your time generating results. MultiQuant Software improves data processing bottlenecks in labs to deliver better data quality and throughput.

Data Integrity

MultiQuant Software provides precise and efficient auditing features to ensure maximum lab compliance.

SCIEX MRM3 and MultiQuant™ Software enabled us to reduce protein quantitation data analysis from 6 hours to 15 minutes, for every hour of LC-MS acquisition time.
- Rick King, Pharma Cadence

Explore One Touch Productivity

Intuitive User Interface

The ease-of-use features in MultiQuant Software are built to minimize mouse clicks and reduce the data review bottleneck in extracting quantitative information from every sample set. Using flexible user interface tools, you can fine-tune the software's display based on specific data processing needs.

The MultiQuant Software user interface of is organized in a manner that you can easily access your most important information. The user interface also allows you to quickly build new processing methods and review data in linked panes to automatically display the chromatographic peaks and integration when a sample is selected. With just a single click, you are able to view all analytes or a specific analyte, automatically update results tables or even peak review.

Another notable feature of MultiQuant Software is its ability to sort MRM data by quality or signal/noise ratio so you can focus your review on only the lowest scoring MRM transitions. An overlay view of multiple MRM transitions for the same species allows you to assess peak shape in order to scan for possible peak interferences in selected channels.

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Click to Enlarge

Consistent and Accurate Integration, Saves Time

Save time by reducing tedious manual tasks as the powerful and robust integration algorithms such as MQ4 and advanced SignalFinder™ are able to generate reliable integration results faster with less user intervention than ever before, helping analysts maximize productivity.

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Process Different Applications at One Terminal

MultiQuant Software is a powerful and an easy-to-use quantitation package, which processes MRM, UV, ADC, and Full Scan Data for quantitation.

MultiQuant Software also provides seamless communication with WATSON LIMS (with GLB/CFT compliant link), support for both UV/DAD and ADC as well as consists of many usability features, which speeds data review and comparisons for quality assessment and interrogation. These features are particularly useful for protein/peptide quantitative workflows and also for assays with hundreds or even thousands of analytes.

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Regulatory Compliant and Audit Trail Functionality

MultiQuant Software provides seamless and robust link with WATSON LIMS, which is the most widely used LIMS system for regulated Bioanalytical laboratories, which means results transfer in a secured and compliant environment that is complete with an audit trail.

MultiQuant Software also gives you full-control to effectively and efficiently manage your audit trail For instance, the Audit Map Editor allows administrators to pre-define reasons and enable electronic signatures.

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Click to Enlarge

Grouped Audit Events on the other hand, gives an added boost to efficiency as users are only prompted once for electronic signatures. Multiple event changes to integration methods are easily tracked and traceable with MultiQuant Software. Reviewers can easily view the data before and after an auditable change by using the data review and audit trail view panes.

Software Downloads        


File Size

Release Date

Release Notes



MultiQuant MD 3.0.3 HotFix 3 30.6 MB 10.14.21 Release Notes 3.0.3

MultiQuant 3.0.3 HotFix

 14.0 MB
Release Notes    3.0.3
MultiQuant MD 3.0.3 HotFix 1 15.4 MB 11.30.18                 Release Notes 3.0.3
MultiQuant 3.0.3 Software  


Release Notes

MultiQuant v3.0.3 Software License Agreement  


Release Notes

MultiQuant 3.0.2 HotFix 2 8.68 MB 09.15.16 Release Notes 3.0.2
MultiQuant 3.0.2 Hotfix 1 8.68 MB 09.15.16 Release Notes 3.0.2
MultiQuant 3.0.2 Software 182 MB


Release Notes  
MultiQuant v3.0.2 Software License Terms  



MultiQuant MD v3.0.1 End User Software License Agreemnt   12.11.17


MultiQuant v3.0 Software License Terms   05.14.13    



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MQ 302 HotFix 1 Release Notes Rev B

MultiQuant 3.0.2 HotFix 2 Release Notes

MultiQuant™ 3.0.2 Software Release Notes

MultiQuant 3.0.3 HotFix 1 Release Notes

MultiQuant Software 2.1 Release Notes

MultiQuant 3.0.3 Software Release Notes

MultiQuant MD 3.0.3 HotFix 1 Release Notes

MRM3 Optimization for Quantitation Tutorial final.doc

Template for Software HotFix Documentation

Microsoft Word - eula_mQuant_ruo.docx

Microsoft Word - eula_mQuant.docx




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